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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_15538426_15538971_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15538426 - 15538971
Intron Length:
546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGAAAG
5'SS Class:
major
3'SS Sequence:
TGCTTTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATCAT
U12 Branch Point Sequence:
TCCCCTGTAAAT
Flanking Amino Acid:
AFRNLPRLKYLSICNTGIRE
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.1
66.4
38.9
Major BPS
71.6
0.54
1
72
33.1
Major PPT
84.5
0.78
0.8
76.9
37.3
Minor 5ss
35.4
-1.7
3
46.5
42.8
Minor BPS
47.8
-0
2.1
65.96
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003003
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003112
15528984 - 15549359
20376
ENSAPLT00000045360
15528984 - 15549359
20376
ENSAPLT00000020794
15523751 - 15549359
25609