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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_15539047_15539132_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15539047 - 15539132
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTGAA
5'SS Class:
major
3'SS Sequence:
TTTCCTCCCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
GTATCTCTGACA
Flanking Amino Acid:
QIFSSEAHFILELCDNLRMT
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
72.4
32.2
Major BPS
61.3
0.28
1
62
30.6
Major PPT
70.4
0.46
1
71.3
27.3
Minor 5ss
34.6
-1.8
3.3
45.9
43.7
Minor BPS
58
0.24
1.7
68.8
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003003
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003112
15528984 - 15549359
20376
ENSAPLT00000045360
15528984 - 15549359
20376
ENSAPLT00000020794
15523751 - 15549359
25609