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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_15541523_15542365_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15541523 - 15542365
Intron Length:
843

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
TTTCATTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTTCATTCCACA
Flanking Amino Acid:
HAFNGTKLNQLILKDNRNLK
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
71.2
40.3
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
81.7
0.71
0.8
76.4
31.9
Minor 5ss
36.8
-1.5
2.9
52.3
44.3
Minor BPS
46.5
-0.2
2.1
66.1
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003003
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003112
15528984 - 15549359
20376
ENSAPLT00000045360
15528984 - 15549359
20376
ENSAPLT00000020794
15523751 - 15549359
25609