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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_15543619_15548104_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15543619 - 15548104
Intron Length:
4486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
GTTATTTTAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
GTTATTTTAATA
Flanking Amino Acid:
CCAFRNLRTENYRDDSYNTS
Intron Amino Acid Position:
288

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
74.4
36
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
73.7
0.53
1
70
40.2
Minor 5ss
36.2
-1.6
2.9
43
37.7
Minor BPS
67.6
0.55
1.2
72.13
33.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003003
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045360
15528984 - 15549359
20376