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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_15560170_15561397_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15560170 - 15561397
Intron Length:
1228

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTAGC
5'SS Class:
major
3'SS Sequence:
CTTGTGTATCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
TGCTACTTAACA
Flanking Amino Acid:
GLQHFTAAGLGASRPGATLA
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
68.8
42.2
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
70.2
0.46
1
62.3
43.5
Minor 5ss
34.8
-1.7
3
42.1
39.8
Minor BPS
72.7
0.71
1.5
77.36
39.2

Associated Gene:

Gene:
GTF2A1L
Ensembl Gene ID:
ENSAPLG00000028188
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018239
15553745 - 15565204
11460