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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_15561445_15563024_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15561445 - 15563024
Intron Length:
1580

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGATGT
5'SS Class:
major
3'SS Sequence:
ATTGCTTCCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAT
Flanking Amino Acid:
TFHRVLQASSVIPAGRGLQH
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.3
72.5
39.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
72.6
0.51
0.8
70.5
35.6
Minor 5ss
35.1
-1.7
3.1
48.5
47
Minor BPS
79.5
1
1.2
92.62
29

Associated Gene:

Gene:
GTF2A1L
Ensembl Gene ID:
ENSAPLG00000028188
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018239
15553745 - 15565204
11460