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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_15563149_15563442_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15563149 - 15563442
Intron Length:
294

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTTGG
5'SS Class:
major
3'SS Sequence:
ATTCTCTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTGACCTTAATA
Flanking Amino Acid:
DEQVLKDLKQLWETKVMQSK
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.2
63.5
43.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
83.6
0.76
0.8
77.9
30.1
Minor 5ss
42
-0.9
2.4
50.4
45.9
Minor BPS
70.8
0.65
1.3
71.78
40.8

Associated Gene:

Gene:
GTF2A1L
Ensembl Gene ID:
ENSAPLG00000028188
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018239
15553745 - 15565204
11460