About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_15574965_15575329_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15574965 - 15575329
Intron Length:
365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCTGGG
5'SS Class:
major
3'SS Sequence:
TTTCTAACTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TGTTTTCTAACT
Flanking Amino Acid:
VIQKAFYNCQVEIEKKWIRL
Intron Amino Acid Position:
699

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.2
59.7
45.2
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
81
0.7
0.8
74.5
34
Minor 5ss
43.7
-0.7
3
58.3
46.4
Minor BPS
67.4
0.62
1.6
84.98
35.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002684
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002715
15574890 - 15584409
9520