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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_15575533_15582487_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15575533 - 15582487
Intron Length:
6955

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAATAAT
5'SS Class:
major
3'SS Sequence:
TATCTTTTCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TGTGTTTTATCT
Flanking Amino Acid:
KIDRLPDKNSSSDHPHSLSY
Intron Amino Acid Position:
631

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
83.1
28.3
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
72.3
0.5
1
71.3
38.3
Minor 5ss
38.5
-1.3
3
51
39.8
Minor BPS
58.1
0.33
1.7
75.62
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000002684
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002715
15574890 - 15584409
9520