Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_15609116_15610327_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15609116 - 15610327

Intron Length:

1212

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATCTAT

5'SS Class:

strong_major

3'SS Sequence:

TTTGATTTACCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

TCTGTTTCAATT

Flanking Amino Acid:

MLTITTDNEKAPDVESREDL

Intron Amino Acid Position:

658

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.73

76.8

34.6

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

77.4

0.62

70.6

44.1

Minor 5ss

45.6

-0.5

2.9

64.6

46.7

Minor BPS

54.6

0.22

1.6

70.72

41.5

Associated Gene:

Gene:

PPP1R21

Ensembl Gene ID:

ENSAPLG00000001162

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019027

15604727 - 15629955

25229

ENSAPLT00000001432

15604727 - 15631827

27101