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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_15612911_15613587_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15612911 - 15613587
Intron Length:
677

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTTCA
5'SS Class:
major
3'SS Sequence:
TATCCTTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TATCCTTTCACA
Flanking Amino Acid:
AVAYMKSLKKPCADSVPYEE
Intron Amino Acid Position:
537

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
71.5
34.4
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
81.3
0.7
0.8
75.9
32.3
Minor 5ss
42.9
-0.8
2.4
51.4
45
Minor BPS
62.8
0.4
1.7
73.96
37.6

Associated Gene:

Gene:
PPP1R21
Ensembl Gene ID:
ENSAPLG00000001162
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019027
15604727 - 15629955
25229
ENSAPLT00000001432
15604727 - 15631827
27101