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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_15617486_15620555_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15617486 - 15620555
Intron Length:
3070

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTGTGCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CCATTTTAAAAT
Flanking Amino Acid:
TDTISPLNQKFSQYLHENAL
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
75.8
39.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
69.5
0.44
0.9
68.7
37.2
Minor 5ss
36
-1.6
3.6
55.8
48.4
Minor BPS
48
-0
1.7
60.63
43.6

Associated Gene:

Gene:
PPP1R21
Ensembl Gene ID:
ENSAPLG00000001162
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019027
15604727 - 15629955
25229
ENSAPLT00000001432
15604727 - 15631827
27101