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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_15622560_15624569_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15622560 - 15624569
Intron Length:
2010

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTACGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGTGATTTAATA
Flanking Amino Acid:
ISEKVPFNDTRSNRYNALNI
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
84.8
32.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
89.7
0.89
0.7
85
29.8
Minor 5ss
42.3
-0.8
3.1
59.9
38.7
Minor BPS
59.7
0.3
1.6
68.68
38.1

Associated Gene:

Gene:
PPP1R21
Ensembl Gene ID:
ENSAPLG00000001162
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019027
15604727 - 15629955
25229
ENSAPLT00000001432
15604727 - 15631827
27101