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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_15624665_15627065_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15624665 - 15627065
Intron Length:
2401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTTATTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTACATTGAAT
Flanking Amino Acid:
AKDCRLRTEECQQQLKNLQA
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
87
27.7
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
78.4
0.64
0.9
77.7
35.8
Minor 5ss
38.8
-1.3
3.4
55
43.6
Minor BPS
60.8
0.42
1.8
82.9
37.5

Associated Gene:

Gene:
PPP1R21
Ensembl Gene ID:
ENSAPLG00000001162
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019027
15604727 - 15629955
25229
ENSAPLT00000001432
15604727 - 15631827
27101