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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_15628182_15629291_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15628182 - 15629291
Intron Length:
1110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATGCT
5'SS Class:
major
3'SS Sequence:
TTTTCTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATGCAT
U12 Branch Point Sequence:
ATGCATGTAGCT
Flanking Amino Acid:
LSEARGKKNKKSAESSSQLS
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
73.9
34.7
Major BPS
58.4
0.21
1.3
69.4
37.7
Major PPT
92.6
0.96
0.5
92.8
16.9
Minor 5ss
40.8
-1
3.2
59
45.7
Minor BPS
41.8
-0.5
2.2
60.61
43

Associated Gene:

Gene:
PPP1R21
Ensembl Gene ID:
ENSAPLG00000001162
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019027
15604727 - 15629955
25229
ENSAPLT00000001432
15604727 - 15631827
27101