Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_15629439_15629805_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15629439 - 15629805

Intron Length:

367

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATCCCC

5'SS Class:

major

3'SS Sequence:

TTTGGTCACTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TAGCTTTTAAAA

Flanking Amino Acid:

DEQANSAALKEQLKLKDQSL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.8

0.63

1.1

62.6

42.2

Major BPS

90.4

0.7

90.2

19.3

Major PPT

72.7

0.51

70.3

40.4

Minor 5ss

39.2

-1.2

52.3

44.4

Minor BPS

57.5

0.23

1.4

62.79

37.1

Associated Gene:

Gene:

PPP1R21

Ensembl Gene ID:

ENSAPLG00000001162

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019027

15604727 - 15629955

25229

ENSAPLT00000001432

15604727 - 15631827

27101