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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_157106_165333_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
157106 - 165333
Intron Length:
8228

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTTAATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATAAAAT
U12 Branch Point Sequence:
TTGTGTTTAATC
Flanking Amino Acid:
RTLVMLDEQGEQLERIEEGM
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
23.1
Major BPS
61.8
0.29
1.1
67.7
34.6
Major PPT
71.5
0.48
1.1
71.1
43.4
Minor 5ss
40.5
-1.1
2.7
50.7
45.7
Minor BPS
64.9
0.45
1.7
73.46
38.5

Associated Gene:

Gene:
SNAP25
Ensembl Gene ID:
ENSAPLG00000008826
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009204
148081 - 174889
26809