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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_15781257_15781370_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15781257 - 15781370
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACTTTT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TAATCCTTACTT
Flanking Amino Acid:
TACPTKNSMEGASTSATENF
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
1.1
87.9
29.3
Major BPS
83
0.82
0.8
82
24.9
Major PPT
81
0.7
1
82.5
32.7
Minor 5ss
55.9
0.2
2.5
76
39.7
Minor BPS
70.3
0.71
1.6
82.12
39.3

Associated Gene:

Gene:
FBXO11
Ensembl Gene ID:
ENSAPLG00000016215
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016942
15744064 - 15816998
72935