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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_15781453_15787209_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15781453 - 15787209
Intron Length:
5757

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAACT
5'SS Class:
major
3'SS Sequence:
TACTGTTTAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAAATAT
U12 Branch Point Sequence:
TACTGTTTAATA
Flanking Amino Acid:
RVSGKSQDLSAAPAEQYLQE
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1.1
78.1
36.3
Major BPS
59.7
0.24
1.1
55.7
39.9
Major PPT
69.8
0.45
1
65.8
39.5
Minor 5ss
41.7
-0.9
2.9
59.3
44.8
Minor BPS
60.3
0.32
1.7
67.71
39.6

Associated Gene:

Gene:
FBXO11
Ensembl Gene ID:
ENSAPLG00000016215
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016942
15744064 - 15816998
72935