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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_15789971_15790053_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15789971 - 15790053
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
ACTCTTCTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GCTTTCTAAACT
Flanking Amino Acid:
ARYKGRENMLYYDTIEDALG
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
84
27.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
77.9
0.63
0.8
70
35.9
Minor 5ss
44.9
-0.5
2.8
58.5
40.5
Minor BPS
66.8
0.6
1.7
79.89
42.3

Associated Gene:

Gene:
FBXO11
Ensembl Gene ID:
ENSAPLG00000016215
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016942
15744064 - 15816998
72935