About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_15796306_15796392_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15796306 - 15796392
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
GAGCCAATAAAT
Flanking Amino Acid:
DAYVGYMTIRFNPDDKSAQH
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1
75.5
40.6
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
96.8
1.05
0.5
96.1
13.2
Minor 5ss
36.6
-1.5
3
41.4
44.7
Minor BPS
44.7
-0.3
1.9
59.87
42.1

Associated Gene:

Gene:
FBXO11
Ensembl Gene ID:
ENSAPLG00000016215
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016942
15744064 - 15816998
72935