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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_15815073_15815467_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15815073 - 15815467
Intron Length:
395

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAACT
5'SS Class:
major
3'SS Sequence:
TATTTTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
AGTTTTTGATTC
Flanking Amino Acid:
YTSYPMHDFYRCHTCNTTDR
Intron Amino Acid Position:
815

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1.1
78.1
36.3
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
90.6
0.91
0.7
89.2
27.2
Minor 5ss
41.7
-0.9
2.9
59.3
44.8
Minor BPS
48
-0.1
1.6
57.65
35.2

Associated Gene:

Gene:
FBXO11
Ensembl Gene ID:
ENSAPLG00000016215
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016942
15744064 - 15816998
72935