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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_15815567_15815645_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15815567 - 15815645
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TATTTCTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
GAAAACTAAAGA
Flanking Amino Acid:
GHDVEFIRHDRFFCDCGAGT
Intron Amino Acid Position:
848

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
82.4
31.7
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
85.7
0.8
0.7
81.6
29.9
Minor 5ss
43.7
-0.7
3
61.2
43.7
Minor BPS
42.3
-0.5
2
48.29
41.2

Associated Gene:

Gene:
FBXO11
Ensembl Gene ID:
ENSAPLG00000016215
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016942
15744064 - 15816998
72935