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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_15817121_15817664_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15817121 - 15817664
Intron Length:
544

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGCCT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
TGTTCAGTAACA
Flanking Amino Acid:
EKTMISLRLFRYLCLVVDDA
Intron Amino Acid Position:
1436

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.1
39.5
Major BPS
75.1
0.62
1
65.6
41
Major PPT
86
0.81
0.7
85.8
28.6
Minor 5ss
33.4
-1.9
3.4
48.4
47.3
Minor BPS
58.4
0.26
2.3
77.59
38.9

Associated Gene:

Gene:
MSH6
Ensembl Gene ID:
ENSAPLG00000016015
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016711
15817001 - 15829507
12507