Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_15818204_15818789_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15818204 - 15818789

Intron Length:

586

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTATTTAGT

5'SS Class:

major

3'SS Sequence:

ATTTCATCTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAA

U12 Branch Point Sequence:

AGCTTTTCAATT

Flanking Amino Acid:

EHSLVLVDELGRGTATFDGT

Intron Amino Acid Position:

1318

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.6

0.46

1.1

67.6

43.1

Major BPS

90.8

1.01

0.7

91.9

19.6

Major PPT

80.3

0.68

0.9

71.1

39.3

Minor 5ss

44.1

-0.6

2.6

60.4

44.1

Minor BPS

54.2

0.21

1.5

66.46

Associated Gene:

Gene:

MSH6

Ensembl Gene ID:

ENSAPLG00000016015

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016711

15817001 - 15829507

12507