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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_15826233_15828381_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15826233 - 15828381
Intron Length:
2149

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGAT
5'SS Class:
strong_major
3'SS Sequence:
TGCTGTTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTGAC
U12 Branch Point Sequence:
AGTGTCTGACAT
Flanking Amino Acid:
VSVKYLRQYKGSSDGETQKG
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.1
31
Major BPS
63.7
0.34
1.2
57
41.8
Major PPT
77.8
0.63
0.9
72.8
37.5
Minor 5ss
30.9
-2.2
3.6
45.9
49.3
Minor BPS
44.7
-0.3
1.8
60.88
42.5

Associated Gene:

Gene:
MSH6
Ensembl Gene ID:
ENSAPLG00000016015
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016711
15817001 - 15829507
12507