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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_15901763_15902685_R

Intron Information:

Intron Rank:
153156
Intron Class:
major
Intron Phase:
Intron Coordinates:
15901763 - 15902685
Intron Length:
923

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATTT
5'SS Class:
strong_major
3'SS Sequence:
GCTATTTTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAAAAA
U12 Branch Point Sequence:
ATTCAGTTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.7
86.7
23
Major BPS
61.4
0.28
1.1
67.9
34.4
Major PPT
70.7
0.47
1.1
71
38.7
Minor 5ss
38.4
-1.3
3.3
55.7
48.5
Minor BPS
47.8
-0.1
2.3
66.02
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029976
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022130
15870861 - 15902882
32022