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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_15951465_15951774_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15951465 - 15951774
Intron Length:
310

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTTTCTCAAACT
Flanking Amino Acid:
AEMLETASILRTASENSLII
Intron Amino Acid Position:
743

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.3
1.07
0.7
84.4
33.5
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
88.8
0.87
0.6
88.4
21.1
Minor 5ss
36.9
-1.5
3
51.2
45.2
Minor BPS
63.7
0.51
2
88.42
36.8

Associated Gene:

Gene:
MSH2
Ensembl Gene ID:
ENSAPLG00000015347
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016081
15947497 - 15980899
33403