About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_15951980_15953512_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15951980 - 15953512
Intron Length:
1533

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCGTA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
CGTTTTTGAATT
Flanking Amino Acid:
KGKQMFHIITGPNMGGKSTY
Intron Amino Acid Position:
675

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
74.2
36.5
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
83.6
0.76
0.7
82.3
28.9
Minor 5ss
40.1
-1.1
3.4
52.2
46
Minor BPS
60.2
0.4
1.4
72.62
39

Associated Gene:

Gene:
MSH2
Ensembl Gene ID:
ENSAPLG00000015347
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016081
15947497 - 15980899
33403