About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_15953759_15955611_R

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
15953759 - 15955611
Intron Length:
1853

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATGCA
5'SS Class:
strong_major
3'SS Sequence:
TAATCAAAAACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAATCAA
U12 Branch Point Sequence:
CTCTCTGTAATC
Flanking Amino Acid:
IVKEIINIASGYAEPIQTMN
Intron Amino Acid Position:
593

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
73.5
30.3
Major BPS
71.2
0.53
1
72.3
32.8
Major PPT
55.8
0.13
1.1
49.7
41.6
Minor 5ss
26.9
-2.7
3
32.5
42.3
Minor BPS
53.8
0.1
2
65.01
41.9

Associated Gene:

Gene:
MSH2
Ensembl Gene ID:
ENSAPLG00000015347
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016081
15947497 - 15980899
33403