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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_15955710_15959389_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15955710 - 15959389
Intron Length:
3680

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAGAT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
GTTTTGTTCACA
Flanking Amino Acid:
TQKNGVKFTNSKLSAVNEEY
Intron Amino Acid Position:
560

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
76.8
31.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
81.6
0.71
0.9
75.8
38.1
Minor 5ss
38.2
-1.3
3.4
55.2
49
Minor BPS
49.8
-0
2.4
71.26
41.2

Associated Gene:

Gene:
MSH2
Ensembl Gene ID:
ENSAPLG00000015347
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016081
15947497 - 15980899
33403