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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_15959541_15960603_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15959541 - 15960603
Intron Length:
1063

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGGTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTTAAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCATTTAAAA
Flanking Amino Acid:
SFLQSAAKELGLEAGKSIKL
Intron Amino Acid Position:
510

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
75.6
36.7
Major BPS
100
1.24
0.5
100
0
Major PPT
69.5
0.44
1.1
71.8
36.9
Minor 5ss
37
-1.5
3.6
54.5
49.7
Minor BPS
63.2
0.41
1.6
75.42
35.1

Associated Gene:

Gene:
MSH2
Ensembl Gene ID:
ENSAPLG00000015347
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016081
15947497 - 15980899
33403