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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_15979643_15980670_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15979643 - 15980670
Intron Length:
1028

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGCGTCAC
5'SS Class:
major
3'SS Sequence:
TTTTTTCCCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
AGACTTTTATTT
Flanking Amino Acid:
AVIRQLAGAAGNQKLESVVL
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
59.5
41.6
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
83.9
0.76
0.6
78.2
30.7
Minor 5ss
27.6
-2.6
2.9
26.5
36.8
Minor BPS
48.6
-0
1.5
60.87
37

Associated Gene:

Gene:
MSH2
Ensembl Gene ID:
ENSAPLG00000015347
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016081
15947497 - 15980899
33403