Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_15988282_15989331_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

15988282 - 15989331

Intron Length:

1050

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

GTT|GCCAGGCAG

5'SS Class:

weak_major

3'SS Sequence:

CCTCCTCTCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTGAT

U12 Branch Point Sequence:

TGTTCCTCAACC

Flanking Amino Acid:

IVVLVSSNKVVKEMNEMHRG

Intron Amino Acid Position:

290

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

53.8

0.09

1.4

46.5

41.6

Major BPS

81.2

0.78

1.1

71.4

45.1

Major PPT

76.8

0.6

0.8

68.3

31.9

Minor 5ss

17.8

-3.7

3.7

27.2

37.4

Minor BPS

77.5

0.84

1.5

84.01

34.7

Associated Gene:

Gene:

EPCAM

Ensembl Gene ID:

ENSAPLG00000015136

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015788

15988240 - 15993069

4830