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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_15989548_15989707_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15989548 - 15989707
Intron Length:
160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAA
U12 Branch Point Sequence:
GAACTAGTAAGT
Flanking Amino Acid:
ADVAYYVEKDVKGDSIFLNN
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
1
81.7
30
Major BPS
64.7
0.37
1
73
31.5
Major PPT
82.9
0.74
0.7
81.5
30.5
Minor 5ss
39.7
-1.2
3.4
57.1
40.8
Minor BPS
39
-0.7
2.2
53.25
41.2

Associated Gene:

Gene:
EPCAM
Ensembl Gene ID:
ENSAPLG00000015136
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015788
15988240 - 15993069
4830