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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_15989883_15991211_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
15989883 - 15991211
Intron Length:
1329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CACCTCAAGTCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ACTTGAT
U12 Branch Point Sequence:
GTACCATAAACT
Flanking Amino Acid:
ETPLNTESLKKLYFAACLVV
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
78.6
28.8
Major BPS
75
0.62
1
65.3
41.5
Major PPT
56.8
0.15
1.1
55.1
38.9
Minor 5ss
34.7
-1.7
3.2
43.7
38.1
Minor BPS
52.1
0.15
2
72.9
43

Associated Gene:

Gene:
EPCAM
Ensembl Gene ID:
ENSAPLG00000015136
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015788
15988240 - 15993069
4830