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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_15992556_15993005_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15992556 - 15993005
Intron Length:
450

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
GTGTCTCTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTCAT
U12 Branch Point Sequence:
TCCGCGCTCATG
Flanking Amino Acid:
LLCAAASAQNECVCENNKRV
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
69.7
35.1
Major BPS
67.4
0.43
1.2
69
38.9
Major PPT
78.9
0.65
0.9
69.7
41.5
Minor 5ss
29
-2.4
3.1
36.8
40.4
Minor BPS
35.2
-1.3
2.5
38.6
45.3

Associated Gene:

Gene:
EPCAM
Ensembl Gene ID:
ENSAPLG00000015136
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015788
15988240 - 15993069
4830