Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16006281_16007542_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16006281 - 16007542

Intron Length:

1262

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCT|GTAAGTATT

5'SS Class:

major

3'SS Sequence:

CATATGTTTAAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACATAT

U12 Branch Point Sequence:

ATATGTTTAAAG

Flanking Amino Acid:

EHTRINFFVALYLANTVEED

Intron Amino Acid Position:

125

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.7

0.68

1.1

84.2

33.6

Major BPS

66.4

0.41

61.3

Major PPT

64.4

0.32

1.1

62.9

41.9

Minor 5ss

44.6

-0.6

2.9

70.4

39.5

Minor BPS

52.3

-0

1.9

59.81

41.9

Associated Gene:

Gene:

SPDYA

Ensembl Gene ID:

ENSAPLG00000015043

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015667

16004644 - 16010447

5804