About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16009085_16010368_F

Intron Information:

Intron Rank:
6
Intron Class:
major_hybrid
Intron Phase:
2
Intron Coordinates:
16009085 - 16010368
Intron Length:
1284

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAT|GCTGGTTGA
5'SS Class:
major
3'SS Sequence:
TAGACTGTCAGAG|C
3'SS Class:
major_hybrid
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TTTCTCTTGATT
Flanking Amino Acid:
DMKDTFPAEKIQSRKSRRGS
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.2
0.27
1.4
53.9
43
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
47
-0.1
1.7
49.3
43.5
Minor 5ss
26.6
-2.7
3.9
36.6
40.9
Minor BPS
75.4
0.88
1.1
88.08
30.2

Associated Gene:

Gene:
SPDYA
Ensembl Gene ID:
ENSAPLG00000015043
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015667
16004644 - 16010447
5804