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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16010971_16011575_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
16010971 - 16011575
Intron Length:
605

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAACG
5'SS Class:
strong_major
3'SS Sequence:
ACTTGTTGGAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
TTTTCTTTGAAA
Flanking Amino Acid:
QIVLKDIECNELQKDVFLTE
Intron Amino Acid Position:
583

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
70.8
39.2
Major BPS
74.8
0.62
1
67
39.8
Major PPT
53.2
0.07
1.2
55.3
43.4
Minor 5ss
33.9
-1.8
2.9
39
40
Minor BPS
75.2
0.79
1.3
83.42
30.1

Associated Gene:

Gene:
TRMT61B
Ensembl Gene ID:
ENSAPLG00000023240
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044723
16010679 - 16017112
6434
ENSAPLT00000019296
16010679 - 16017167
6489