About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16011815_16012222_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16011815 - 16012222
Intron Length:
408

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTCAAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
ATTTCTTCAAAA
Flanking Amino Acid:
QGGVCTVYLANITQVIDLLD
Intron Amino Acid Position:
503

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
67
0.38
1.1
69
35.5
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
64.8
0.46
1.6
75.58
35.2

Associated Gene:

Gene:
TRMT61B
Ensembl Gene ID:
ENSAPLG00000023240
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044723
16010679 - 16017112
6434
ENSAPLT00000019296
16010679 - 16017167
6489