About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16033282_16034188_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16033282 - 16034188
Intron Length:
907

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCCACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TTTCTTTCCACT
Flanking Amino Acid:
ALKTEVAVTKVKTPVVNSDT
Intron Amino Acid Position:
439

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
38.1
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
76.2
0.59
0.8
71.3
34.5
Minor 5ss
42
-0.9
3
55
49.2
Minor BPS
50.4
0.09
2
76.97
39.8

Associated Gene:

Gene:
WDR43
Ensembl Gene ID:
ENSAPLG00000014314
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035225
16016544 - 16040527
23984
ENSAPLT00000014997
16016544 - 16040527
23984