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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16034321_16034803_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16034321 - 16034803
Intron Length:
483

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTACTGTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
CTGCCCTTATTT
Flanking Amino Acid:
KSKRKPGEPEDSIEERLGAL
Intron Amino Acid Position:
483

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
82.3
32.2
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
79.2
0.66
0.9
73.4
36.8
Minor 5ss
40.5
-1.1
2.8
53
44.2
Minor BPS
60.2
0.4
1.7
73.02
44.3

Associated Gene:

Gene:
WDR43
Ensembl Gene ID:
ENSAPLG00000014314
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035225
16016544 - 16040527
23984
ENSAPLT00000014997
16016544 - 16040527
23984