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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16034942_16035754_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16034942 - 16035754
Intron Length:
813

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
ACATTTTTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
ACATTTTTAACA
Flanking Amino Acid:
LESNDSDILNKVLNTRKETL
Intron Amino Acid Position:
529

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
87.3
27
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
74
0.54
1
69.7
39.7
Minor 5ss
41.1
-1
3.4
62.8
42
Minor BPS
69.7
0.62
1.2
69.76
36.7

Associated Gene:

Gene:
WDR43
Ensembl Gene ID:
ENSAPLG00000014314
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035225
16016544 - 16040527
23984
ENSAPLT00000014997
16016544 - 16040527
23984