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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16035842_16037260_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16035842 - 16037260
Intron Length:
1419

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTTGATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTGTCTTGATA
Flanking Amino Acid:
IHAVIPLLHELTKRLQGNPY
Intron Amino Acid Position:
558

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
66
40.1
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
75.5
0.57
1
72.9
37.5
Minor 5ss
28.4
-2.5
3.5
37
47.6
Minor BPS
69.5
0.61
1.3
77.25
33.8

Associated Gene:

Gene:
WDR43
Ensembl Gene ID:
ENSAPLG00000014314
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035225
16016544 - 16040527
23984
ENSAPLT00000014997
16016544 - 16040527
23984