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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16040281_16040375_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16040281 - 16040375
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTCCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTCAA
U12 Branch Point Sequence:
AAAAGCTCAAAC
Flanking Amino Acid:
DEMIADKDSDENWDEDEEKE
Intron Amino Acid Position:
670

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
74.4
36.1
Major BPS
63.3
0.33
1.2
67
39.8
Major PPT
80.7
0.69
0.7
73.2
31.8
Minor 5ss
34.5
-1.8
3.3
44.7
43.5
Minor BPS
43.4
-0.5
2
49.94
39.3

Associated Gene:

Gene:
WDR43
Ensembl Gene ID:
ENSAPLG00000014314
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014997
16016544 - 16040527
23984