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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16066579_16067438_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
5UTR
Intron Coordinates:
16066579 - 16067438
Intron Length:
860

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGCTTG
5'SS Class:
weak_major
3'SS Sequence:
TCCCTTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TGTGTCATAAAA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.48
1.1
64.4
42.2
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
84.4
0.77
0.7
79.2
26.5
Minor 5ss
50.2
0.01
2.8
70.5
41
Minor BPS
51
0.03
1.8
66.09
39.9

Associated Gene:

Gene:
TOGARAM2
Ensembl Gene ID:
ENSAPLG00000014230
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014818
16066435 - 16099405
32971