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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16068177_16069388_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16068177 - 16069388
Intron Length:
1212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGGGC
5'SS Class:
major
3'SS Sequence:
CTTTATTTTAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTATTTTAAAG
Flanking Amino Acid:
MATEDNFTAAKYHAPVAVY
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
66.2
39.3
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
77.5
0.62
1
78.2
33.8
Minor 5ss
28.9
-2.4
3.6
41.1
45.6
Minor BPS
63.9
0.3
1.5
68.85
38.6

Associated Gene:

Gene:
TOGARAM2
Ensembl Gene ID:
ENSAPLG00000014230
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044295
16052537 - 16099405
46869
ENSAPLT00000014818
16066435 - 16099405
32971
ENSAPLT00000044994
16060145 - 16099405
39261