About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16070555_16071014_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16070555 - 16071014
Intron Length:
460

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
GCCCACTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTGAA
U12 Branch Point Sequence:
TTCTCTTACACT
Flanking Amino Acid:
MSEGLLAPQRGLTDSSDSKE
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
69.4
0.48
1.2
63.4
44.3
Major PPT
68
0.41
0.9
61.1
34.7
Minor 5ss
34.4
-1.8
3.4
46.7
48.6
Minor BPS
55.8
0.26
2.1
78.9
44

Associated Gene:

Gene:
TOGARAM2
Ensembl Gene ID:
ENSAPLG00000014230
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044295
16052537 - 16099405
46869
ENSAPLT00000014818
16066435 - 16099405
32971
ENSAPLT00000044994
16060145 - 16099405
39261