About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_16071230_16072835_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16071230 - 16072835
Intron Length:
1606

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAGGG
5'SS Class:
major
3'SS Sequence:
TTCCCATTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
ATTTTCCCATTT
Flanking Amino Acid:
EGNHKELISEASLQPLYCCD
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
63.2
41.7
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
81.7
0.71
0.8
73.2
36.2
Minor 5ss
29.2
-2.4
3.4
38.5
46.6
Minor BPS
46.8
-0.1
2
71
40.2

Associated Gene:

Gene:
TOGARAM2
Ensembl Gene ID:
ENSAPLG00000014230
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014818
16066435 - 16099405
32971
ENSAPLT00000044994
16060145 - 16099405
39261
ENSAPLT00000044295
16052537 - 16099405
46869